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CNB03230 sphingosine hydroxylase, putative [ Cryptococcus neoformans var. neoformans JEC21 ]

Gene ID: 3256056, updated on 17-May-2024

Summary

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Gene symbol
CNB03230
Gene description
sphingosine hydroxylase, putative
Locus tag
CNB03230
See related
FungiDB:CNB03230; VEuPathDB:CNB03230
Gene type
protein coding
RNA name
sphingosine hydroxylase, putative
RefSeq status
PROVISIONAL
Organism
Cryptococcus neoformans var. neoformans JEC21 (strain: JEC21, serotype: D)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex
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Genomic context

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See CNB03230 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_006684.1 (974095..975984, complement)

Chromosome 2 - NC_006684.1Genomic Context describing neighboring genes Neighboring gene alpha-1,2-mannosyltransferase, putative Neighboring gene hypothetical protein Neighboring gene pseudo Neighboring gene hypothetical protein Neighboring gene expressed protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_006684.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans. Loftus BJ, et al. Science, 2005 Feb 25. PMID 15653466, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine hydroxylase, putative

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006684.1 Reference assembly

    Range
    974095..975984 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_568900.2 → XP_568900.1  sphingosine hydroxylase, putative [Cryptococcus neoformans var. neoformans JEC21]

    See identical proteins and their annotated locations for XP_568900.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q55XW9, Q5KM26
    Conserved Domains (2) summary
    COG3000
    Location:139 → 315
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
    pfam04116
    Location:179 → 315
    FA_hydroxylase; Fatty acid hydroxylase superfamily
Nucleotide Protein
Heading Accession and Version

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