rbm14a RNA binding motif protein 14a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rbm14aprovided by ZNC
Official Full Name: RNA binding motif protein 14aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-050522-496
See related: Ensembl:ENSDARG00000012723 AllianceGenome:ZFIN:ZDB-GENE-050522-496
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: im:7053198; wu:fc08a04; zgc:110682
Summary: Predicted to enable RNA binding activity and zinc ion binding activity. Acts upstream of with a negative effect on BMP signaling pathway. Predicted to be located in nucleus. Is expressed widely. Orthologous to several human genes including RBM14-RBM4 (RBM14-RBM4 readthrough). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 21

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	21	NC_007132.7 (27370671..27379183)
105	previous assembly	GRCz10 (GCF_000002035.5)	21	NC_007132.6 (27333944..27345965)

Chromosome 21 - NC_007132.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

fc08a04.x1 (e-PCR)
- UniSTS:192311

fc08a04.x1 (e-PCR)
- UniSTS:192312

AI601527 (e-PCR)
- UniSTS:206186

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_negative_effect BMP signaling pathway	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within dorsal/ventral pattern formation	IC Inferred by Curator more info	PubMed

General protein information

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Preferred Names: RNA-binding protein 14a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.