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    zbtb16a zinc finger and BTB domain containing 16a [ Danio rerio ]

    Gene ID: 323269, updated on 13-May-2012

    Summary

    Official Symbol
    zbtb16aprovided by ZNC
    Official Full Name
    zinc finger and BTB domain containing 16aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-1989
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    ZNF145; zbtb16; zgc:55675; wu:fb93g12; wu:fc07c10
    Annotation information
    Annotation category: partial on reference assembly

    Genomic context

    Location :
    chromosome: 21
    Sequence :
    Chromosome: 21; NC_007132.5 (22452636..22585489, complement)
    See zbtb16a in MapViewer

    Chromosome 21 - NC_007132.5Genomic Context describing neighboring genes Neighboring gene 5-hydroxytryptamine receptor 3A-like Neighboring gene 5-hydroxytryptamine receptor 3A-like Neighboring gene uncharacterized LOC100537063 Neighboring gene neural cell adhesion molecule 1a

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:81611 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:81611 BioGRID:283159 btbd6a    BioGRID  PubMed Affinity Capture-Western 

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    regulation of transcription, DNA-dependent IEA
    Inferred from Electronic Annotation
    more info
     
    transcription, DNA-dependent IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    intracellular IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    zinc finger and BTB domain-containing protein 16-A
    Names
    zinc finger and BTB domain-containing protein 16-A
    plzfa
    zinc finger protein PLZF-A
    zinc finger and BTB domain containing 16
    promyelocytic leukemia zinc finger protein-A
    zinc finger protein 145 (Kruppel-like, expressed in promyelocytic leukemia)

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199635.1NP_955929.1  zinc finger and BTB domain-containing protein 16-A

      Status: PROVISIONAL

      Source sequence(s)
      BC046887
      UniProtKB/Swiss-Prot
      Q802Y8
      Conserved Domains (4) summary
      COG5048
      Location:458620
      Blast Score: 96
      COG5048; FOG: Zn-finger [General function prediction only]
      pfam13465
      Location:559582
      Blast Score: 93
      zf-H2C2_2; Zinc-finger double domain
      cl02518
      Location:25122
      Blast Score: 211
      BTB; BTB/POZ domain
      cl15478
      Location:515537
      Blast Score: 80
      zf-C2H2; Zinc finger, C2H2 type

    RefSeqs of Annotated Genomes: Build 5.1

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zv9 Primary Assembly

    Genomic

    1. NC_007132.5 Reference Zv9 Primary Assembly

      Range
      22452636..22585489, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein Strain
    Heading Accession and Version
    genomic CR388411.8 (6914..10406) None
    genomic CU694464.10 None
    genomic CU862019.2 (69631..72566) None
    mRNA BC046887.1 AAH46887.1 AB
    mRNA BC165228.1 AAI65228.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q802Y8.1 GenPept UniProtKB/Swiss-Prot:Q802Y8

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