U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

vtg3 vitellogenin 3, phosvitinless [ Danio rerio (zebrafish) ]

Gene ID: 30518, updated on 15-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
vtg3provided by ZNC
Official Full Name
vitellogenin 3, phosvitinlessprovided by ZNC
Primary source
ZFIN:ZDB-GENE-991019-2
See related
Ensembl:ENSDARG00000016448 AllianceGenome:ZFIN:ZDB-GENE-991019-2
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
vg3; cb1001; wu:fb58g02; wu:fb59f05; wu:fb61d01
Summary
Predicted to enable lipid transporter activity. Acts upstream of or within cellular response to estrogen stimulus. Is expressed in several structures, including axis; digestive system; hatching gland; ovary; and sensory system. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 11
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (7359713..7380693, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (7349874..7370854, complement)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene DIRAS family, GTP-binding RAS-like 1a Neighboring gene IFI30 lysosomal thiol reductase b Neighboring gene adhesion G protein-coupled receptor L4 Neighboring gene adhesion G protein-coupled receptor L2a

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Effects of 17a-ethinylestradiol on the expression of three estrogen-responsive genes and cellular ultrastructure of liver and testes in male zebrafish. Islinger M, et al. Aquat Toxicol, 2003 Jan 24. PMID 12505378
  2. Ecotoxicogenomics to support ecological risk assessment: a case study with bisphenol A in fish. Villeneuve DL, et al. Environ Sci Technol, 2012 Jan 3. PMID 21786754
  3. Influence of multiwall carbon nanotubes on the toxicity of 17β-estradiol in the early life stages of zebrafish. Yan Z, et al. Environ Sci Pollut Res Int, 2018 Mar. PMID 29282666
  4. Microparticle formulations alter the toxicity of fenofibrate to the zebrafish Danio rerio embryo. Hering I, et al. Aquat Toxicol, 2021 May. PMID 33799113
  5. Inhibition of vitellogenin gene induction by 2,3,7,8-tetrachlorodibenzo-p-dioxin is mediated by aryl hydrocarbon receptor 2 (AHR2) in zebrafish (Danio rerio). Bugel SM, et al. Aquat Toxicol, 2013 Jan 15. PMID 23142599

See all (60) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables lipid transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables lipid transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables nutrient reservoir activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cellular response to estrogen stimulus IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within cellular response to estrogen stimulus IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within hatching IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within lipid transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of fertilization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to estradiol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
vitellogenin 3, phosvitinless
Names
phosvitinless vitellogenin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131265.1 → NP_571340.1  vitellogenin 3, phosvitinless precursor

    Status: VALIDATED

    Source sequence(s)
    CR678040, CU464206
    UniProtKB/TrEMBL
    A0A8M1P7D8, F1QQQ3
    Related
    ENSDARP00000094194.4, ENSDART00000103418.5
    Conserved Domains (3) summary
    pfam01347
    Location:24 → 592
    Vitellogenin_N; Lipoprotein amino terminal region
    pfam09172
    Location:626 → 912
    DUF1943; Domain of unknown function (DUF1943)
    pfam09175
    Location:1070 → 1238
    DUF1944; Domain of unknown function (DUF1944)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    7359713..7380693 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools