U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

DEHA2A01628g DEHA2A01628p [ Debaryomyces hansenii CBS767 ]

Gene ID: 2899625, updated on 17-May-2024

Summary

Go to the top of the page Help
Gene symbol
DEHA2A01628g
Gene description
DEHA2A01628p
Primary source
FungiDB:DEHA2A01628g
Locus tag
DEHA2A01628g
See related
VEuPathDB:DEHA2A01628g
Gene type
protein coding
RNA name
DEHA2A01628p
RefSeq status
PROVISIONAL
Organism
Debaryomyces hansenii CBS767 (strain: CBS767, type-material: culture from type material of Debaryomyces hansenii)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Debaryomyces
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See DEHA2A01628g in Genome Data Viewer
Location:
chromosome: A
Exon count:
1
Sequence:
Chromosome: A; NC_006043.2 (132972..135875, complement)

Chromosome A - NC_006043.2Genomic Context describing neighboring genes Neighboring gene DEHA2A01584p Neighboring gene DEHA2A01606p Neighboring gene DEHA2A01650p Neighboring gene DEHA2A01672p

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_006043.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome evolution in yeasts. Dujon B, et al. Nature, 2004 Jul 1. PMID 15229592

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription elongation-coupled chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DSIF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
DEHA2A01628p
XP_456409.2
  • similar to uniprot|P27692 Saccharomyces cerevisiae YML010w SPT5 transcription elongation protein singleton

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006043.2 Reference assembly

    Range
    132972..135875 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_456409.1 → XP_456409.2  DEHA2A01628p [Debaryomyces hansenii CBS767]

    See identical proteins and their annotated locations for XP_456409.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q6BZG0
    Conserved Domains (10) summary
    COG5164
    Location:395 → 965
    SPT5; Transcription elongation factor [Transcription]
    cd06081
    Location:345 → 380
    KOW_Spt5_1; KOW domain of Spt5, repeat 1
    cd06082
    Location:496 → 550
    KOW_Spt5_2; KOW domain of Spt5, repeat 2
    cd06083
    Location:552 → 601
    KOW_Spt5_3; KOW domain of Spt5, repeat 3
    cd06084
    Location:680 → 721
    KOW_Spt5_4; KOW domain of Spt5, repeat 4
    cd06085
    Location:767 → 818
    KOW_Spt5_5; KOW domain of Spt5, repeat 5
    pfam03439
    Location:248 → 330
    Spt5-NGN; Early transcription elongation factor of RNA pol II, NGN section
    pfam11942
    Location:164 → 240
    Spt5_N; Spt5 transcription elongation factor, acidic N-terminal
    pfam12815
    Location:895 → 966
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
    cl09930
    Location:833 → 896
    RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6BZG0.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials