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ANIA_03842 Rab family GTPase rabB [ Aspergillus nidulans FGSC A4 ]

Gene ID: 2873265, updated on 25-Apr-2024

Summary

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Gene symbol
ANIA_03842
Gene description
Rab family GTPase rabB
Locus tag
ANIA_03842
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus nidulans FGSC A4 (strain: FGSC A4)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Nidulantes
Old locus tag
AN3842.4; AN3842.2
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Genomic context

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Location:
chromosome: II
Exon count:
5
Sequence:
Chromosome: II; NC_066258.1 (2833209..2834814, complement)

Chromosome II - NC_066258.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene protein mic60 Neighboring gene hypothetical protein Neighboring gene tetrahydrofolate synthase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066258.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Aspergillus RabB Rab5 integrates acquisition of degradative identity with the long distance movement of early endosomes. Abenza JF, et al. Mol Biol Cell, 2010 Aug 1. PMID 20534811, Free PMC Article
  2. The 2008 update of the Aspergillus nidulans genome annotation: a community effort. Wortman JR, et al. Fungal Genet Biol, 2009 Mar. PMID 19146970, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by AspGD

Function Evidence Code Pubs
enables GTP binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within endocytosis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in endosomal vesicle fusion IEA
Inferred from Electronic Annotation
more info
  
involved_in intracellular protein transport IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within protein targeting to vacuole IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of vacuole organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within small GTPase-mediated signal transduction IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in early endosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in early endosome membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in endomembrane system IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
  
located_in late endosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Rab family GTPase rabB
XP_661446.1
  • transcript_id=CADANIAT00004864

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_066258.1 Reference assembly

    Range
    2833209..2834814 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_656354.2 → XP_661446.1  TPA: Rab family GTPase rabB [Aspergillus nidulans FGSC A4]

    See identical proteins and their annotated locations for XP_661446.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C8V6J1, Q5B6I8
    Conserved Domains (2) summary
    cd01860
    Location:17 → 184
    Rab5_related; Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion
    pfam00071
    Location:19 → 184
    Ras; Ras family
Nucleotide Protein
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Molecular Biology Databases