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ANIA_06007 SKI complex RNA helicase subunit SKI2 [ Aspergillus nidulans FGSC A4 ]

Gene ID: 2871132, updated on 25-Apr-2024

Summary

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Gene symbol
ANIA_06007
Gene description
SKI complex RNA helicase subunit SKI2
Locus tag
ANIA_06007
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus nidulans FGSC A4 (strain: FGSC A4)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Nidulantes
Old locus tag
AN6007.4; AN6007.2
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Genomic context

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See ANIA_06007 in Genome Data Viewer
Location:
chromosome: I
Exon count:
6
Sequence:
Chromosome: I; NC_066257.1 (1524228..1528405)

Chromosome I - NC_066257.1Genomic Context describing neighboring genes Neighboring gene Hsp70 family ATPase sgdE Neighboring gene hypothetical protein Neighboring gene karyopherin kapD Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066257.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The 2008 update of the Aspergillus nidulans genome annotation: a community effort. Wortman JR, et al. Fungal Genet Biol, 2009 Mar. PMID 19146970, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by AspGD

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA helicase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
  
involved_in mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
  
involved_in nuclear-transcribed mRNA catabolic process, non-stop decay IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of Ski complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of Ski complex IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SKI complex RNA helicase subunit SKI2
XP_663611.1
  • transcript_id=CADANIAT00007011

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_066257.1 Reference assembly

    Range
    1524228..1528405
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_658519.1 → XP_663611.1  TPA: SKI complex RNA helicase subunit SKI2 [Aspergillus nidulans FGSC A4]

    See identical proteins and their annotated locations for XP_663611.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C8V339, Q5B0C3
    Conserved Domains (5) summary
    smart00490
    Location:684 → 769
    HELICc; helicase superfamily c-terminal domain
    COG4581
    Location:189 → 1293
    Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
    pfam00270
    Location:327 → 474
    DEAD; DEAD/DEAH box helicase
    pfam08148
    Location:1117 → 1286
    DSHCT; DSHCT (NUC185) domain
    pfam13234
    Location:828 → 1089
    rRNA_proc-arch; rRNA-processing arch domain
Nucleotide Protein
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