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SAR1449 amino acid permease [ Staphylococcus aureus subsp. aureus MRSA252 ]

Gene ID: 2860516, discontinued on 3-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:

Summary

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Gene symbol
SAR1449
Gene description
amino acid permease
Locus tag
SAR1449
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Staphylococcus aureus subsp. aureus MRSA252 (strain: MRSA252, sub-species: aureus MRSA252)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002952.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Miscellaneous features

  • Loc: c1538365-1538297,
    , c1538254-1538186,
    , c1538128-1538060,
    , c1538032-1537964,
    , c1537945-1537877,
    , c1537819-1537751,
    , c1537714-1537646,
    , c1537555-1537502,
    , c1537420-1537352,
    , c1537342-1537274,
    , c1537237-1537178,
    , c1537168-1537100 12 probable transmembrane helices predicted for SAR1449 by TMHMM2.0 at aa 12-34, 49-71, 91-113, 123-145, 152-174, 194-216, 229-251, 282-299, 327-349, 353-375, 388-407 and 411-433
  • Loc: c1538380-1537094 Pfam match to entry PF00324 aa_permeases, Amino acid permease, score -94.10, E-value 4.1e-09

General protein information

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Names
amino acid permease
YP_040851.1
  • Similar to an internal region of Mus musculus large neutral amino acids transporter small subunit 2 LAT2 SW:LAT2_MOUSE (Q9QXW9) (531 aa) fasta scores: E(): 4.8e-33, 31.027% id in 448 aa, and to the full length Bacillus subtilis hypothetical protein YkbA TR:O34739 (EMBL:Z99110) (438 aa) fasta scores: E(): 3.6e-63, 42.955% id in 440 aa

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002952.2 Reference assembly

    Range
    1537076..1538398 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_040851.1 amino acid permease [Staphylococcus aureus subsp. aureus MRSA252]

    Status: PROVISIONAL

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6GGX1.1

Gene LinkOut

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