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Rccd1 RCC1 domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 269955, updated on 30-Apr-2024

Summary

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Official Symbol
Rccd1provided by MGI
Official Full Name
RCC1 domain containing 1provided by MGI
Primary source
MGI:MGI:2444156
See related
Ensembl:ENSMUSG00000038930 AllianceGenome:MGI:2444156
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5830436H09; E430018M08Rik
Summary
Predicted to act upstream of or within chromatin organization. Predicted to be located in cytosol and plasma membrane. Is expressed in central nervous system; gonad; metanephros; and vascular system. Orthologous to human RCCD1 (RCC1 domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E14 (RPKM 4.7), CNS E11.5 (RPKM 4.2) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Rccd1 in Genome Data Viewer
Location:
7 D2; 7 45.64 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (79944339..79974512, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (80294591..80324687, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E2826 Neighboring gene neugrin, neurite outgrowth associated Neighboring gene vacuolar protein sorting 33B Neighboring gene STARR-positive B cell enhancer ABC_E2827 Neighboring gene protein regulator of cytokinesis 1 Neighboring gene unc-45 myosin chaperone A Neighboring gene STARR-positive B cell enhancer ABC_E2828 Neighboring gene STARR-positive B cell enhancer ABC_E6566 Neighboring gene HD domain containing 3 Neighboring gene high mobility group box 2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Decreased expression levels of Ifi genes is associated to the increased resistance to spontaneous arthritis disease in mice deficiency of IL-1RA. Liu X, et al. BMC Immunol, 2016 Aug 2. PMID 27480124, Free PMC Article
  2. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  3. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
acts_upstream_of_or_within chromatin organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
RCC1 domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173445.4 → NP_775621.2  RCC1 domain-containing protein 1

    See identical proteins and their annotated locations for NP_775621.2

    Status: VALIDATED

    Source sequence(s)
    AC136740, AK030872, AK088482, BM218704
    Consensus CDS
    CCDS21394.1
    UniProtKB/Swiss-Prot
    Q6IS64, Q8BJF2, Q8BTU7, Q8C0K3
    Related
    ENSMUSP00000048043.5, ENSMUST00000047362.11
    Conserved Domains (1) summary
    COG5184
    Location:159 → 341
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    79944339..79974512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017322294.3 → XP_017177783.1  RCC1 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q6IS64, Q8BJF2, Q8BTU7, Q8C0K3
    Conserved Domains (1) summary
    COG5184
    Location:159 → 341
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  2. XM_006540928.4 → XP_006540991.1  RCC1 domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006540991.1

    UniProtKB/Swiss-Prot
    Q6IS64, Q8BJF2, Q8BTU7, Q8C0K3
    Conserved Domains (1) summary
    COG5184
    Location:159 → 341
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  3. XM_006540926.4 → XP_006540989.1  RCC1 domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006540989.1

    UniProtKB/Swiss-Prot
    Q6IS64, Q8BJF2, Q8BTU7, Q8C0K3
    Conserved Domains (1) summary
    COG5184
    Location:159 → 341
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  4. XM_006540930.5 → XP_006540993.1  RCC1 domain-containing protein 1 isoform X3

    Conserved Domains (2) summary
    COG5184
    Location:41 → 162
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    pfam00415
    Location:147 → 190
    RCC1; Regulator of chromosome condensation (RCC1) repeat

  5. XM_006540929.4 → XP_006540992.1  RCC1 domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006540992.1

    UniProtKB/Swiss-Prot
    Q6IS64, Q8BJF2, Q8BTU7, Q8C0K3
    Conserved Domains (1) summary
    COG5184
    Location:159 → 341
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  6. XM_036153143.1 → XP_036009036.1  RCC1 domain-containing protein 1 isoform X2

    Conserved Domains (2) summary
    pfam00415
    Location:180 → 228
    RCC1; Regulator of chromosome condensation (RCC1) repeat
    pfam13540
    Location:163 → 192
    RCC1_2; Regulator of chromosome condensation (RCC1) repeat

RNA

  1. XR_882031.4 RNA Sequence

  2. XR_004934113.1 RNA Sequence

  3. XR_004934114.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BTU7.2 GenPept UniProtKB/Swiss-Prot:Q8BTU7

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