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LOC25498496 scarecrow-like protein 9 [ Medicago truncatula (barrel medic) ]

Gene ID: 25498496, updated on 7-Dec-2023

Summary

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Gene symbol
LOC25498496
Gene description
scarecrow-like protein 9
Locus tag
MtrunA17_Chr7g0238891
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 7 NC_053048.1 (29005514..29008687)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 7 NC_016413.2 (22543775..22546944)

Chromosome 7 - NC_053048.1Genomic Context describing neighboring genes Neighboring gene cycloartenol synthase Neighboring gene F-box/kelch-repeat protein At3g23880 Neighboring gene uncharacterized protein At5g02240 Neighboring gene uncharacterized LOC25498498

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scarecrow-like protein 9
Names
GRAS family transcription factor
putative transcription factor GRAS family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053048.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    29005514..29008687
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013593420.3 → XP_013448874.1  scarecrow-like protein 9

    UniProtKB/TrEMBL
    A0A072U0I2
    Conserved Domains (1) summary
    pfam03514
    Location:369 → 740
    GRAS; GRAS domain family
Nucleotide Protein
Heading Accession and Version

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