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LOC25496079 transcription factor VIP1 [ Medicago truncatula (barrel medic) ]

Gene ID: 25496079, updated on 7-Dec-2023

Summary

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Gene symbol
LOC25496079
Gene description
transcription factor VIP1
Locus tag
MtrunA17_Chr6g0463571
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 6 NC_053047.1 (12728373..12733863, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 6 NC_016412.2 (12233699..12239223, complement)

Chromosome 6 - NC_053047.1Genomic Context describing neighboring genes Neighboring gene SKP1-interacting partner 15 Neighboring gene abscisic acid 8'-hydroxylase 3 Neighboring gene squalene monooxygenase SE1 Neighboring gene cytochrome P450 71D8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide? Boscari A, et al. Plant Physiol, 2013 Jan. PMID 23136381, Free PMC Article
  2. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor VIP1
Names
bZIP transcription factor
putative transcription factor bZIP family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053047.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    12728373..12733863 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013596350.3 → XP_013451804.1  transcription factor VIP1

    UniProtKB/TrEMBL
    A0A072U839
    Conserved Domains (2) summary
    cd14703
    Location:154 → 203
    bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain
    TIGR04211
    Location:173 → 251
    SH3_and_anchor; SH3 domain protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases