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LOC25487527 dehydration-responsive element-binding protein 1F [ Medicago truncatula (barrel medic) ]

Gene ID: 25487527, updated on 7-Dec-2023

Summary

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Gene symbol
LOC25487527
Gene description
dehydration-responsive element-binding protein 1F
Locus tag
MtrunA17_Chr2g0321071
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 2 NC_053043.1 (42165815..42166498, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 2 NC_016408.2 (36077326..36078045, complement)

Chromosome 2 - NC_053043.1Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene dehydration-responsive element-binding protein 1F Neighboring gene E3 ubiquitin-protein ligase BRE1A Neighboring gene uncharacterized LOC25487529

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dehydration-responsive element-binding protein 1F
Names
CBF-like transcription factor
putative transcription factor AP2-EREBP family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053043.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    42165815..42166498 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039831113.1 → XP_039687047.1  dehydration-responsive element-binding protein 1F

    UniProtKB/TrEMBL
    A0A072VLE6
    Conserved Domains (1) summary
    cd00018
    Location:45 → 107
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
Nucleotide Protein
Heading Accession and Version

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