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LOC25487446 zinc finger protein ZAT5 [ Medicago truncatula (barrel medic) ]

Gene ID: 25487446, updated on 18-Aug-2023

Summary

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Gene symbol
LOC25487446
Gene description
zinc finger protein ZAT5
Locus tag
MtrunA17_Chr2g0320311
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 2 NC_053043.1 (41609954..41611152)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 2 NC_016408.2 (35505398..35506568)

Chromosome 2 - NC_053043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC25487444 Neighboring gene uncharacterized LOC112419446 Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
zinc finger protein ZAT5
Names
C2H2-type zinc finger protein
putative transcription factor C2H2 family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053043.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    41609954..41611152
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013609390.3 → XP_013464844.2  zinc finger protein ZAT5

    UniProtKB/TrEMBL
    A0A072VA47, A0A396JB23
    Conserved Domains (1) summary
    pfam13912
    Location:213 → 238
    zf-C2H2_6; C2H2-type zinc finger
Nucleotide Protein
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