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SPAC4F10.16c putative P-type ATPase [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2543523, updated on 11-Apr-2024

Summary

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Gene symbol
SPAC4F10.16c
Gene description
putative P-type ATPase
Primary source
PomBase:SPAC4F10.16c
Locus tag
SPAC4F10.16c
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003424.3 (4863739..4869888, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene GYF domain protein Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene nascent polypeptide-associated complex beta subunit Neighboring gene actin assembly factor Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene putative HIT zinc finger domain-containing protein Neighboring gene WD repeat-containing protein Neighboring gene glutaredoxin Grx1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Global coordination of transcriptional control and mRNA decay during cellular differentiation. Amorim MJ, et al. Mol Syst Biol, 2010 Jun 8. PMID 20531409, Free PMC Article
  2. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
  3. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  5. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATPase-coupled intramembrane lipid transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables glycosylceramide flippase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidylcholine flippase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables phosphatidylcholine floppase activity IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidylethanolamine flippase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables phosphatidylserine floppase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in phospholipid translocation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in endoplasmic reticulum HDA PubMed 
part_of phospholipid-translocating ATPase complex ISO
Inferred from Sequence Orthology
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative P-type ATPase
NP_594759.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    4863739..4869888 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020186.2 → NP_594759.1  putative P-type ATPase [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594759.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O36028
    Conserved Domains (6) summary
    TIGR01652
    Location:128 → 1318
    ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
    pfam13246
    Location:702 → 800
    Cation_ATPase; Cation transport ATPase (P-type)
    pfam16209
    Location:128 → 174
    PhoLip_ATPase_N; Phospholipid-translocating ATPase N-terminal
    pfam16212
    Location:1061 → 1310
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
    cl00297
    Location:854 → 913
    R3H; R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich ...
    cl21460
    Location:1013 → 1050
    HAD_like; Haloacid Dehalogenase-like Hydrolases
Nucleotide Protein
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