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SPAC17G8.08c GDT1-like protein [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542208, updated on 20-May-2024

Summary

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Gene symbol
SPAC17G8.08c
Gene description
GDT1-like protein
Primary source
PomBase:SPAC17G8.08c
Locus tag
SPAC17G8.08c
See related
FungiDB:SPAC17G8.08c; VEuPathDB:SPAC17G8.08c
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See SPAC17G8.08c in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003424.3 (2355278..2356601, complement)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene putative dihydroxy-acid dehydratase Neighboring gene mediator complex subunit Med20 Neighboring gene YEATS family histone acetyltransferase subunit Yaf9 Neighboring gene Set1C complex subunit Shg1 Neighboring gene mitotic spindle checkpoint protein Dma1 Neighboring gene mannosyltransferase Imt3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Yeast Gdt1 is a Golgi-localized calcium transporter required for stress-induced calcium signaling and protein glycosylation. Colinet AS, et al. Sci Rep, 2016 Apr 14. PMID 27075443, Free PMC Article
  2. High-Throughput Identification of Nuclear Envelope Protein Interactions in Schizosaccharomyces pombe Using an Arrayed Membrane Yeast-Two Hybrid Library. Varberg JM, et al. G3 (Bethesda), 2020 Dec 3. PMID 33109728, Free PMC Article
  3. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  4. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  5. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables calcium ion transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables calcium:proton antiporter activity TAS
Traceable Author Statement
more info
 PubMed 
enables manganese ion transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in Golgi calcium ion homeostasis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in Golgi calcium ion transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in calcium ion transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in manganese ion transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in proton transmembrane transport TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
is_active_in Golgi apparatus HDA PubMed 
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in endoplasmic reticulum HDA PubMed 

General protein information

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Preferred Names
GDT1-like protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2355278..2356601 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019162.2 → NP_593731.1  GDT1-like protein [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593731.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q10320
    Conserved Domains (2) summary
    COG2119
    Location:47 → 287
    Gdt1; Putative Ca2+/H+ antiporter, TMEM165/GDT1 family [General function prediction only]
    pfam01169
    Location:209 → 278
    UPF0016; Uncharacterized protein family UPF0016
Nucleotide Protein
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