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car2 ornithine transaminase Car2 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540626, updated on 17-May-2024

Summary

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Gene symbol
car2
Gene description
ornithine transaminase Car2
Primary source
PomBase:SPBC21C3.08c
Locus tag
SPBC21C3.08c
See related
FungiDB:SPBC21C3.08c; VEuPathDB:SPBC21C3.08c
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See car2 in Genome Data Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (3809059..3810816, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene zinc finger protein Sap62 Neighboring gene tRNA (cytosine) methyltransferase Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene putative fumarylacetoacetate hydrolase family protein Neighboring gene miscRNA Neighboring gene putative 5-amino-6-(5-phosphoribosylamino) uracil reductase Neighboring gene tRNA-Lys

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genetic engineering solution to the "arginine conversion problem" in stable isotope labeling by amino acids in cell culture (SILAC). Bicho CC, et al. Mol Cell Proteomics, 2010 Jul. PMID 20460254, Free PMC Article
  2. SIN-inhibitory phosphatase complex promotes Cdc11p dephosphorylation and propagates SIN asymmetry in fission yeast. Singh NS, et al. Curr Biol, 2011 Dec 6. PMID 22119525, Free PMC Article
  3. Predicting the fission yeast protein interaction network. Pancaldi V, et al. G3 (Bethesda), 2012 Apr. PMID 22540037, Free PMC Article
  4. Genetic interactions and functional analyses of the fission yeast gsk3 and amk2 single and double mutants defective in TORC1-dependent processes. Rallis C, et al. Sci Rep, 2017 Mar 10. PMID 28281664, Free PMC Article
  5. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables identical protein binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ornithine aminotransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables pyridoxal phosphate binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in L-proline biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in arginine catabolic process to glutamate IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in arginine catabolic process to proline via ornithine IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in arginine catabolic process to proline via ornithine IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
ornithine transaminase Car2
NP_596588.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    3809059..3810816 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022508.2 → NP_596588.1  ornithine transaminase Car2 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596588.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P78805, Q9P7L5
    Conserved Domains (2) summary
    COG0160
    Location:25 → 424
    GabT; 4-aminobutyrate aminotransferase or related aminotransferase [Amino acid transport and metabolism]
    TIGR01885
    Location:13 → 422
    Orn_aminotrans; ornithine aminotransferase
Nucleotide Protein
Heading Accession and Version

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