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GTPase-activating protein [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2539715, updated on 18-Sep-2024

Summary

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Official Full Name
GTPase-activating protein
Primary source
PomBase:SPBC1778.09
Locus tag
SPOM_SPBC1778.09
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_003423.3 (3112452..3114397)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene carnosine N-methyltransferase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ARP2/3 actin-organizing complex subunit Arc21 Neighboring gene ncRNA Neighboring gene serine/threonine protein kinase Ppk21/Pdk1 Neighboring gene ncRNA Neighboring gene proteasome core particle subunit beta 1 Pre3 Neighboring gene alpha-1,3-galactosyltransferase Otg3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Yeast X-chromosome-associated protein 5 (Xap5) functions with H2A.Z to suppress aberrant transcripts. Anver S, et al. EMBO Rep, 2014 Aug. PMID 24957674, Free PMC Article
  2. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
  3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables GTPase activator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in vesicle-mediated transport NAS
Non-traceable Author Statement
more info
  
Component Evidence Code Pubs
is_active_in cytosol HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
GTPase-activating protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    3112452..3114397
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022214.3 → NP_596292.1  GTPase-activating protein [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596292.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9Y7J5
    Conserved Domains (2) summary
    COG5210
    Location:1 → 403
    COG5210; GTPase-activating protein [General function prediction only]
    pfam00566
    Location:198 → 340
    RabGAP-TBC; Rab-GTPase-TBC domain
Nucleotide Protein
Heading Accession and Version

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