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Pilra paired immunoglobin-like type 2 receptor alpha [ Mus musculus (house mouse) ]

Gene ID: 231805, updated on 12-May-2024

Summary

Official Symbol
Pilraprovided by MGI
Official Full Name
paired immunoglobin-like type 2 receptor alphaprovided by MGI
Primary source
MGI:MGI:2450529
See related
Ensembl:ENSMUSG00000046245 AllianceGenome:MGI:2450529
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
FDF03
Summary
Predicted to enable MHC class I protein binding activity. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in heart ventricle; lung; and urethra. Orthologous to several human genes including PILRA (paired immunoglobin like type 2 receptor alpha). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in spleen adult (RPKM 6.1), bladder adult (RPKM 3.6) and 25 other tissues See more
Orthologs
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Genomic context

See Pilra in Genome Data Viewer
Location:
5 G2; 5 76.77 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (137820214..137834540, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (137821952..137836278, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E4797 Neighboring gene protein phosphatase 1, regulatory subunit 35 Neighboring gene STARR-positive B cell enhancer ABC_E857 Neighboring gene STARR-positive B cell enhancer ABC_E1312 Neighboring gene STARR-positive B cell enhancer ABC_E4798 Neighboring gene methylphosphate capping enzyme Neighboring gene zinc finger, CW type with PWWP domain 1 Neighboring gene STARR-seq mESC enhancer starr_14656 Neighboring gene paired immunoglobin-like type 2 receptor beta 1 Neighboring gene STARR-seq mESC enhancer starr_14658 Neighboring gene predicted gene, 36551 Neighboring gene paired immunoglobin-like type 2 receptor beta 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables MHC class I protein binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within signal transduction ISO
Inferred from Sequence Orthology
more info
PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
paired immunoglobulin-like type 2 receptor alpha
Names
cell surface receptor FDF03
inhibitory receptor PILR-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_153510.3NP_705730.1  paired immunoglobulin-like type 2 receptor alpha precursor

    See identical proteins and their annotated locations for NP_705730.1

    Status: VALIDATED

    Source sequence(s)
    AC125063, AK041670, BB583033, BY171703
    Consensus CDS
    CCDS19780.1
    UniProtKB/Swiss-Prot
    Q2YFS3, Q8BYA6
    Related
    ENSMUSP00000050313.5, ENSMUST00000058897.11
    Conserved Domains (2) summary
    cl00686
    Location:198261
    NfeD; NfeD-like C-terminal, partner-binding
    cl11960
    Location:40134
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    137820214..137834540 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)