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rip-1 RFS-1 Interacting Partner [ Caenorhabditis elegans ]

Gene ID: 187515, updated on 18-Sep-2024

Summary

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Official Symbol
rip-1
Official Full Name
RFS-1 Interacting Partner
Primary source
WormBase:WBGene00010973
Locus tag
CELE_R01H10.5
See related
AllianceGenome:WB:WBGene00010973
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Part of DNA recombinase mediator complex. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: III
Exon count:
4
Sequence:
Chromosome: III; NC_003281.10 (10257173..10258741, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Solute carrier organic anion transporter family member Neighboring gene DNA polymerase alpha subunit B Neighboring gene ncRNA Neighboring gene Coronin-like protein cor-1 Neighboring gene Uncharacterized protein Neighboring gene BBSome complex member bbs-5 Neighboring gene PH domain-containing protein Neighboring gene Connector enhancer of kinase suppressor of ras

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Polar and Nucleotide-Dependent Mechanism of Action for RAD51 Paralogs in RAD51 Filament Remodeling. Taylor MRG, et al. Mol Cell, 2016 Dec 1. PMID 27867009, Free PMC Article
  2. Rad51 Paralogs Remodel Pre-synaptic Rad51 Filaments to Stimulate Homologous Recombination. Taylor MRG, et al. Cell, 2015 Jul 16. PMID 26186187, Free PMC Article
  3. Single-molecule analysis reveals cooperative stimulation of Rad51 filament nucleation and growth by mediator proteins. Belan O, et al. Mol Cell, 2021 Mar 4. PMID 33421363, Free PMC Article
  4. Promotion of Homologous Recombination by SWS-1 in Complex with RAD-51 Paralogs in Caenorhabditis elegans. McClendon TB, et al. Genetics, 2016 May. PMID 26936927, Free PMC Article
  5. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA recombinase mediator complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
RFS-1 Interacting Partner
NP_499271.1
  • Product from WormBase gene class rip;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    10257173..10258741 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066870.4 → NP_499271.1  RFS-1 Interacting Partner [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_499271.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q21621
    Conserved Domains (1) summary
    PRK05658
    Location:129 → 203
    PRK05658; RNA polymerase sigma factor RpoD; Validated
Nucleotide Protein
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