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K09A11.1 BED-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 187182, updated on 18-Sep-2024

Summary

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Official Symbol
K09A11.1
Official Full Name
BED-type domain-containing protein
Primary source
WormBase:WBGene00010704
Locus tag
CELE_K09A11.1
See related
AllianceGenome:WB:WBGene00010704
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA binding activity; metal ion binding activity; and protein dimerization activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in epithelial system; head; and vulva. Orthologous to human ZBED1 (zinc finger BED-type containing 1). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See K09A11.1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
5
Sequence:
Chromosome: X; NC_003284.9 (13262495..13264589)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene CUB domain-containing protein Neighboring gene tRNA-Thr Neighboring gene ncRNA Neighboring gene tRNA-Tyr Neighboring gene CYtochrome P450 family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. Reboul J, et al. Nat Genet, 2003 May. PMID 12679813
  2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
BED-type domain-containing protein
NP_510202.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    13262495..13264589
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_077801.5 → NP_510202.2  BED-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_510202.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q21374
    Conserved Domains (2) summary
    smart00614
    Location:6 → 49
    ZnF_BED; BED zinc finger
    pfam05699
    Location:509 → 589
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
Nucleotide Protein
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