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LOC18610083 homeobox-leucine zipper protein HDG2 [ Theobroma cacao (cacao) ]

Gene ID: 18610083, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18610083
Gene description
homeobox-leucine zipper protein HDG2
Gene type
protein coding
RefSeq status
MODEL
Organism
Theobroma cacao
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Genomic context

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See LOC18610083 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Criollo_cocoa_genome_V2 (GCF_000208745.1) 2 NC_030851.1 (38400201..38406485)

Chromosome 2 - NC_030851.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18610081 Neighboring gene uncharacterized LOC18610082 Neighboring gene uncharacterized LOC108660730 Neighboring gene transmembrane protein 97

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_030851.1 Chromosome 2 Reference Criollo_cocoa_genome_V2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein HDG2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Theobroma cacao Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Criollo_cocoa_genome_V2 Primary Assembly

Genomic

  1. NC_030851.1 Reference Criollo_cocoa_genome_V2 Primary Assembly

    Range
    38400201..38406485
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018115991.1 → XP_017971480.1  homeobox-leucine zipper protein HDG2 isoform X2

    UniProtKB/TrEMBL
    A0A061E8V7

  2. XM_018115990.1 → XP_017971479.1  homeobox-leucine zipper protein HDG2 isoform X1

    UniProtKB/TrEMBL
    A0A061E8V7

  3. XM_007045550.2 → XP_007045612.1  homeobox-leucine zipper protein HDG2 isoform X4

    See identical proteins and their annotated locations for XP_007045612.1

    UniProtKB/TrEMBL
    A0A061E8V7, A0A061EGL0
    Conserved Domains (3) summary
    cd08875
    Location:236 → 460
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    cl21524
    Location:85 → 144
    PRK13923; putative spore coat protein regulator protein YlbO; Provisional
    pfam00046
    Location:60 → 113
    Homeobox; Homeobox domain

  4. XM_018115989.1 → XP_017971478.1  homeobox-leucine zipper protein HDG2 isoform X1

    UniProtKB/TrEMBL
    A0A061E8V7

  5. XM_007045549.2 → XP_007045611.1  homeobox-leucine zipper protein HDG2 isoform X3

    See identical proteins and their annotated locations for XP_007045611.1

    UniProtKB/TrEMBL
    A0A061E8V7, A0A061E9X1
    Conserved Domains (3) summary
    cd08875
    Location:268 → 492
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    cl21524
    Location:117 → 176
    PRK13923; putative spore coat protein regulator protein YlbO; Provisional
    pfam00046
    Location:92 → 145
    Homeobox; Homeobox domain
Nucleotide Protein
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