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17B homing endonuclease [ Aeromonas phage PX29 ]

Gene ID: 18560136, updated on 8-Jan-2023

Summary

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Gene symbol
17B
Gene description
homing endonuclease
Locus tag
CL89_gp266
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aeromonas phage PX29 (nat-host: Aeromonas salmonicida)
Lineage
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Straboviridae; Angelvirus; Angelvirus px29
Old locus tag
PX29p212
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Genomic context

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Sequence:
NC_023688.1 (138174..139973)

NC_023688.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene gp15 tail sheath stabilizer and completion protein Neighboring gene terminase small subunit Neighboring gene terminase large subunit Neighboring gene tail sheath Neighboring gene gp19 tail tube protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023688.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomes of the T4-related bacteriophages as windows on microbial genome evolution. Petrov VM, et al. Virol J, 2010 Oct 28. PMID 21029436, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
homing endonuclease
YP_009011641.1
  • contains putative GIY-YIG endonuclease and C-intein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_023688.1 Reference assembly

    Range
    138174..139973
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_009011641.1 homing endonuclease [Aeromonas phage PX29]

    See identical proteins and their annotated locations for YP_009011641.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E5DQE5
    Conserved Domains (3) summary
    cd00081
    Location:249 → 342
    Hint; Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, ...
    cd00283
    Location:102 → 169
    GIY-YIG_Cterm; GIYX(10-11)YIG family of class I homing endonucleases C-terminus (GIY-YIG_Cterm). Homing endonucleases promote the mobility of intron or intein by recognizing and cleaving a homologous allele that lacks the sequence. They catalyze a double-strand break ...
    cl15257
    Location:6 → 92
    GIY-YIG_SF; GIY-YIG nuclease domain superfamily
Nucleotide Protein
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