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LOC18429955 ethylene-responsive transcription factor RAP2-13 [ Amborella trichopoda ]

Gene ID: 18429955, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18429955
Gene description
ethylene-responsive transcription factor RAP2-13
Locus tag
AMTR_s00089p00102760
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006497735.1 (1257126..1259565, complement)

NW_006497735.1Genomic Context describing neighboring genes Neighboring gene high mobility group B protein 9 Neighboring gene uncharacterized protein At1g04910 Neighboring gene uncharacterized LOC110006880 Neighboring gene small EDRK-rich factor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006497735.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene-responsive transcription factor RAP2-13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006497735.1 Reference AMTR1.0 Primary Assembly

    Range
    1257126..1259565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006840121.2 → XP_006840184.1  ethylene-responsive transcription factor RAP2-13

    See identical proteins and their annotated locations for XP_006840184.1

    UniProtKB/TrEMBL
    W1P2I4
    Conserved Domains (1) summary
    smart00380
    Location:243 → 299
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
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