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LOC18107224 transcription factor TCP20 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 18107224, updated on 23-Nov-2023

Summary

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Gene symbol
LOC18107224
Gene description
transcription factor TCP20
Locus tag
POPTR_017G068748v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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Location:
chromosome: 17
Exon count:
3
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 17 NC_037301.2 (5641632..5647001)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) Unplaced Scaffold NW_020167889.1 (210594..214826)

Chromosome 17 - NC_037301.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18107220 Neighboring gene ABC transporter I family member 11, chloroplastic Neighboring gene uncharacterized LOC127904530 Neighboring gene protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor TCP20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037301.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    5641632..5647001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024592306.2 → XP_024448074.1  transcription factor TCP20

    UniProtKB/TrEMBL
    B9N0Z2
    Conserved Domains (1) summary
    pfam03634
    Location:86 → 145
    TCP; TCP family transcription factor

  2. XM_024592307.2 → XP_024448075.1  transcription factor TCP20

    UniProtKB/TrEMBL
    B9N0Z2
    Conserved Domains (1) summary
    pfam03634
    Location:86 → 145
    TCP; TCP family transcription factor

  3. XM_006373159.3 → XP_006373221.1  transcription factor TCP20

    See identical proteins and their annotated locations for XP_006373221.1

    UniProtKB/TrEMBL
    B9N0Z2
    Conserved Domains (1) summary
    pfam03634
    Location:86 → 145
    TCP; TCP family transcription factor
Nucleotide Protein
Heading Accession and Version

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