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LOC18098802 nuclear transcription factor Y subunit C-3 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 18098802, updated on 23-Nov-2023

Summary

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Gene symbol
LOC18098802
Gene description
nuclear transcription factor Y subunit C-3
Locus tag
POPTR_005G035800v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 5 NC_037289.2 (2305074..2308457, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 5 NC_037289.1 (2642177..2645440, complement)

Chromosome 5 - NC_037289.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18109963 Neighboring gene disease resistance protein RPM1 Neighboring gene pentatricopeptide repeat-containing protein At1g74630 Neighboring gene scopoletin glucosyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear transcription factor Y subunit C-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037289.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    2305074..2308457 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006382553.3 → XP_006382615.2  nuclear transcription factor Y subunit C-3

    UniProtKB/TrEMBL
    A0A2K2AB64
    Conserved Domains (1) summary
    COG5208
    Location:73 → 245
    HAP5; CCAAT-binding factor, subunit C [Transcription]
Nucleotide Protein
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