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ddr-1 Discoidin domain-containing receptor A [ Caenorhabditis elegans ]

Gene ID: 180817, updated on 18-Sep-2024

Summary

Official Symbol
ddr-1
Official Full Name
Discoidin domain-containing receptor A
Primary source
WormBase:WBGene00016104
Locus tag
CELE_C25F6.4
See related
AllianceGenome:WB:WBGene00016104
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable collagen binding activity and protein tyrosine kinase collagen receptor activity. Involved in motor neuron axon guidance and positive regulation of axon regeneration. Predicted to be located in axon; perikaryon; and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in hypodermis; intestinal muscle; nervous system; and pharynx. Human ortholog(s) of this gene implicated in gastrointestinal system cancer (multiple); lung non-small cell carcinoma; osteoarthritis; and spondylometaepiphyseal dysplasia, short limb-hand type. Orthologous to human DDR1 (discoidin domain receptor tyrosine kinase 1) and DDR2 (discoidin domain receptor tyrosine kinase 2). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

See ddr-1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
15
Sequence:
Chromosome: X; NC_003284.9 (5461230..5466785)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Dihydropyrimidine dehydrogenase [NADP(+)] Neighboring gene ncRNA

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables non-membrane spanning protein tyrosine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 
enables signaling receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in cell differentiation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cell surface receptor protein tyrosine kinase signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in innate immune response IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in motor neuron axon guidance IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of axon regeneration IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in perikaryon IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Discoidin domain-containing receptor A
NP_508926.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    5461230..5466785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_076525.5NP_508926.2  Discoidin domain-containing receptor A [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_508926.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q18163
    Conserved Domains (4) summary
    smart00231
    Location:34180
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain
    cd00057
    Location:27179
    FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
    pfam07714
    Location:519761
    Pkinase_Tyr; Protein tyrosine kinase
    cl21453
    Location:525762
    PKc_like; Protein Kinases, catalytic domain