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tag-65 CID domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 179857, updated on 18-Sep-2024

Summary

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Official Symbol
tag-65
Official Full Name
CID domain-containing protein
Primary source
WormBase:WBGene00006442
Locus tag
CELE_F58G11.5
See related
AllianceGenome:WB:WBGene00006442
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable nucleic acid binding activity. Predicted to be involved in cellular calcium ion homeostasis. Predicted to be active in perinuclear region of cytoplasm. Orthologous to human CHERP (calcium homeostasis endoplasmic reticulum protein). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: V
Exon count:
10
Sequence:
Chromosome: V; NC_003283.11 (13676022..13678587, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene DEAD-box ATP-dependent RNA helicase rde-12 Neighboring gene HTH OST-type domain-containing protein Neighboring gene MFS domain-containing protein Neighboring gene Vacuolar fusion protein CCZ1 homolog Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multiple ERK substrates execute single biological processes in Caenorhabditis elegans germ-line development. Arur S, et al. Proc Natl Acad Sci U S A, 2009 Mar 24. PMID 19264959, Free PMC Article
  2. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
  3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  5. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in intracellular calcium ion homeostasis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in perinuclear region of cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
CID domain-containing protein
NP_506386.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    13676022..13678587 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073985.7 → NP_506386.1  CID domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_506386.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5ED97
    Conserved Domains (2) summary
    smart00443
    Location:602 → 649
    G_patch; glycine rich nucleic binding domain
    pfam04818
    Location:165 → 226
    CTD_bind; RNA polymerase II-binding domain
Nucleotide Protein
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