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K07B1.7 G-patch domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 179318, updated on 12-Jun-2024

Summary

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Gene symbol
K07B1.7
Gene description
G-patch domain-containing protein
Locus tag
CELE_K07B1.7
See related
AllianceGenome:WB:WBGene00019467
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable nucleic acid binding activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Orthologous to human GPATCH3 (G-patch domain containing 3). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See K07B1.7 in Genome Data Viewer
Location:
chromosome: V
Exon count:
3
Sequence:
Chromosome: V; NC_003283.11 (9345022..9346962, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial Neighboring gene Target Of Splicing Neighboring gene Trypsin-like protease try-5 Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in negative regulation of RIG-I signaling pathway IEA
Inferred from Electronic Annotation
more info
  
involved_in negative regulation of type I interferon production IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
G-patch domain-containing protein
NP_001317743.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    9345022..9346962 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001330874.2 → NP_001317743.1  G-patch domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    O01886
    Conserved Domains (1) summary
    pfam01585
    Location:397 → 434
    G-patch; G-patch domain

RNA

  1. NR_138502.1 RNA Sequence

    Status: REVIEWED

  2. NR_138499.1 RNA Sequence

    Status: REVIEWED

  3. NR_138501.1 RNA Sequence

    Status: REVIEWED

  4. NR_138500.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
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