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LOC17900540 transcription factor TGA9 [ Capsella rubella ]

Gene ID: 17900540, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17900540
Gene description
transcription factor TGA9
Locus tag
CARUB_v10011576mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238923.1 (2697332..2703615, complement)

NW_006238923.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC17897151 Neighboring gene U-box domain-containing protein 4 Neighboring gene rho GTPase-activating protein 5 Neighboring gene transmembrane 9 superfamily member 5 Neighboring gene 60S ribosomal protein L10a-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238923 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor TGA9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238923.1 Reference Caprub1_0

    Range
    2697332..2703615 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006303569.2 → XP_006303631.1  transcription factor TGA9

    See identical proteins and their annotated locations for XP_006303631.1

    UniProtKB/TrEMBL
    R0I2T4
    Conserved Domains (2) summary
    cd14708
    Location:185 → 237
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    pfam14144
    Location:266 → 342
    DOG1; Seed dormancy control

  2. XM_023788990.1 → XP_023644758.1  transcription factor TGA9

    UniProtKB/TrEMBL
    R0I2T4
    Conserved Domains (2) summary
    cd14708
    Location:185 → 237
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    pfam14144
    Location:266 → 342
    DOG1; Seed dormancy control
Nucleotide Protein
Heading Accession and Version

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