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nhr-114 Nuclear hormone receptor 114 [ Caenorhabditis elegans ]

Gene ID: 178821, updated on 18-Sep-2024

Summary

Official Symbol
nhr-114
Official Full Name
Nuclear hormone receptor 114
Primary source
WormBase:WBGene00003704
Locus tag
CELE_Y45G5AM.1
See related
AllianceGenome:WB:WBGene00003704
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Involved in regulation of gene expression. Acts upstream of with a positive effect on S-adenosylmethionine cycle. Located in nucleus. Is expressed in germ line; hypodermis; and intestine. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

Location:
chromosome: V
Exon count:
7
Sequence:
Chromosome: V; NC_003283.11 (4187202..4190008)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Cilia- and flagella-associated protein 157 Neighboring gene Rad21/Rec8-like protein C-terminal eukaryotic domain-containing protein Neighboring gene Protein pid-5 Neighboring gene Aftiphilin clathrin-binding box domain-containing protein;Clathrin_bdg domain-containing protein;Transcription factor Neighboring gene Dolichyl-phosphate beta-glucosyltransferase;dolichyl-phosphate beta-glucosyltransferase Neighboring gene DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables nuclear receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_positive_effect S-adenosylmethionine cycle IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in cell differentiation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in intracellular receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Nuclear hormone receptor 114
NP_001024242.1
  • Confirmed by transcript evidence
NP_001317845.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    4187202..4190008
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001029071.5NP_001024242.1  Nuclear hormone receptor 114 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024242.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A168HAV7, G5EEM0, Q86PI7
    Conserved Domains (2) summary
    cd06960
    Location:1590
    NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers
    smart00430
    Location:218379
    HOLI; Ligand binding domain of hormone receptors
  2. NM_001330839.3NP_001317845.1  Nuclear hormone receptor 114 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A168HAV7
    Conserved Domains (1) summary
    smart00430
    Location:20104
    HOLI; Ligand binding domain of hormone receptors

RNA

  1. NR_138521.1 RNA Sequence

    Status: REVIEWED

  2. NR_138520.1 RNA Sequence

    Status: REVIEWED