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LOC17877103 non-lysosomal glucosylceramidase [ Capsella rubella ]

Gene ID: 17877103, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17877103
Gene description
non-lysosomal glucosylceramidase
Locus tag
CARUB_v10025826mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17877103 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238916.1 (6173906..6179339, complement)

NW_006238916.1Genomic Context describing neighboring genes Neighboring gene mitotic spindle checkpoint protein MAD1 Neighboring gene chloride channel protein CLC-c Neighboring gene protein FAR1-RELATED SEQUENCE 5 Neighboring gene heat shock 70 kDa protein 7, chloroplastic Neighboring gene uncharacterized LOC17876074

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238916 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glucosylceramidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glucosylceramide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
non-lysosomal glucosylceramidase
Names
AT5G49900-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238916.1 Reference Caprub1_0

    Range
    6173906..6179339 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006279898.2 → XP_006279960.1  non-lysosomal glucosylceramidase isoform X1

    See identical proteins and their annotated locations for XP_006279960.1

    UniProtKB/TrEMBL
    R0GNT0
    Conserved Domains (2) summary
    pfam04685
    Location:527 → 890
    DUF608; Protein of unknown function, DUF608
    pfam12215
    Location:93 → 411
    GBA2_N; beta-Glucocerebrosidase 2 N terminal

  2. XM_023784911.1 → XP_023640679.1  non-lysosomal glucosylceramidase isoform X2

  3. XM_023784916.1 → XP_023640684.1  non-lysosomal glucosylceramidase isoform X3

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases