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Y43C5B.3 SLC (SoLute Carrier) homolog [ Caenorhabditis elegans ]

Gene ID: 177922, updated on 18-Sep-2024

Summary

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Official Symbol
Y43C5B.3
Official Full Name
SLC (SoLute Carrier) homolog
Primary source
WormBase:WBGene00012786
Locus tag
CELE_Y43C5B.3
See related
AllianceGenome:WB:WBGene00012786
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in branched-chain amino acid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC25A44 (solute carrier family 25 member 44). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: IV
Exon count:
5
Sequence:
Chromosome: IV; NC_003282.8 (10353167..10355120)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Calcium/calmodulin-dependent protein kinase II association-domain domain-containing protein;Calcium/calmodulin-dependent protein kinase type II;calcium/calmodulin-dependent protein kinase Neighboring gene ncRNA Neighboring gene Tyrosine-protein kinase Neighboring gene DH domain-containing protein;GON-4-like protein Neighboring gene G-patch domain and KOW motifs-containing protein homolog 1 Neighboring gene glucuronosyltransferase Neighboring gene Deacetylase sirtuin-type domain-containing protein;NAD-dependent protein deacetylase sir-2.1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables branched-chain amino acid transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables branched-chain amino acid transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in branched-chain amino acid catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in branched-chain amino acid transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SLC (SoLute Carrier) homolog
NP_501908.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    10353167..10355120
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069507.6 → NP_501908.2  SLC (SoLute Carrier) homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501908.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EDJ9
    Conserved Domains (1) summary
    pfam00153
    Location:56 → 126
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
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