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C11D2.4 Queuosine 5'-phosphate N-glycosylase/hydrolase [ Caenorhabditis elegans ]

Gene ID: 177378, updated on 11-Apr-2024

Summary

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Gene symbol
C11D2.4
Gene description
Queuosine 5'-phosphate N-glycosylase/hydrolase
Primary source
WormBase:WBGene00015702
Locus tag
CELE_C11D2.4
See related
AllianceGenome:WB:WBGene00015702
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in tRNA-guanine transglycosylation. Is expressed in several structures, including body wall musculature; excretory cell; intestine; nervous system; and non-striated muscle. Orthologous to human C9orf64 (chromosome 9 open reading frame 64). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See C11D2.4 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
4
Sequence:
Chromosome: IV; NC_003282.8 (6155492..6156960, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene BLOC-1-related complex subunit 5 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene PUA domain-containing protein Neighboring gene Ion transport domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in tRNA-guanine transglycosylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in tRNA-guanine transglycosylation IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Queuosine 5'-phosphate N-glycosylase/hydrolase
NP_500924.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    6155492..6156960 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_068523.8 → NP_500924.2  Queuosine 5'-phosphate N-glycosylase/hydrolase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_500924.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    O45069
    Conserved Domains (1) summary
    pfam10343
    Location:56 → 341
    Q_salvage; Potential Queuosine, Q, salvage protein family
Nucleotide Protein
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