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C34E10.10 rRNA-processing protein UTP23 homolog [ Caenorhabditis elegans ]

Gene ID: 175715, updated on 23-Nov-2023

Summary

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Gene symbol
C34E10.10
Gene description
rRNA-processing protein UTP23 homolog
Primary source
WormBase:WBGene00016411
Locus tag
CELE_C34E10.10
See related
AllianceGenome:WB:WBGene00016411
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to be involved in rRNA processing. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in colorectal adenocarcinoma. Orthologous to human UTP23 (UTP23 small subunit processome component). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See C34E10.10 in Genome Data Viewer
Location:
chromosome: III
Exon count:
3
Sequence:
Chromosome: III; NC_003281.10 (5226818..5227884, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Histone H2A/H2B/H3 domain-containing protein Neighboring gene Annexin Neighboring gene CHCH domain-containing protein;CX9C domain-containing protein Neighboring gene ATP synthase subunit beta, mitochondrial Neighboring gene Protein arginine N-methyltransferase 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables small ribosomal subunit rRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
  
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  
part_of small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
rRNA-processing protein UTP23 homolog
NP_498110.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    5226818..5227884 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_065709.5 → NP_498110.1  rRNA-processing protein UTP23 homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498110.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95QS4
    Conserved Domains (1) summary
    cd09866
    Location:2 → 149
    PIN_Fcf1-Utp23-H; PIN domain of rRNA-processing protein Fcf1- and Utp23-like homologs found in eukaryotes except fungi
Nucleotide Protein
Heading Accession and Version

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