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CHC_T00009270001 probable histone acetyltransferase GCN5 [ Chondrus crispus (carragheen) ]

Gene ID: 17320999, updated on 25-Jan-2024

Summary

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Gene symbol
CHC_T00009270001
Gene description
probable histone acetyltransferase GCN5
Locus tag
CHC_T00009270001
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Chondrus crispus (strain: Stackhouse)
Lineage
Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniophycidae; Gigartinales; Gigartinaceae; Chondrus
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Genomic context

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Exon count:
2

NW_005178997.1Genomic Context describing neighboring genes Neighboring gene WD40-repeat containing protein Neighboring gene ribosomal protein S9 family protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005178997.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Collén J, et al. Proc Natl Acad Sci U S A, 2013 Mar 26. PMID 23503846, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

3'UTR

  • Loc: 190635-191080

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3 acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone acetyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable histone acetyltransferase GCN5

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_005178997.1 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005713233.1 → XP_005713290.1  probable histone acetyltransferase GCN5 [Chondrus crispus]

    See identical proteins and their annotated locations for XP_005713290.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    R7Q4P5
    Conserved Domains (3) summary
    COG5076
    Location:45 → 374
    COG5076; Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
    cl02556
    Location:295 → 394
    Bromodomain; Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
    cl17182
    Location:115 → 195
    NAT_SF; N-Acyltransferase superfamily: Various enyzmes that characteristicly catalyze the transfer of an acyl group to a substrate
Nucleotide Protein
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