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BPP0229 AMP-binding enzyme [ Bordetella parapertussis 12822 ]

Gene ID: 1668936, discontinued on 6-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:

Summary

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Gene symbol
BPP0229
Gene description
AMP-binding enzyme
Locus tag
BPP0229
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bordetella parapertussis 12822 (strain: 12822)
Lineage
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002928.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Miscellaneous features

  • Loc: c241509-241474 PS00455 AMP-binding domain signature.
  • Loc: c241959-240574 HMMPfam hit to PF00501, AMP-binding enzyme, score 6.3e-81

General protein information

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Names
AMP-binding enzyme
NP_882588.1
  • Similar to Aeropyrum pernix hypothetical long-chain-fatty-acid--CoA ligase APE1307 SWALL:Q9YCF0 (EMBL:AP000061) (651 aa) fasta scores: E(): 1.4e-81, 37.95% id in 635 aa, and weakly similar to Homo sapiens very long-chain acyl-CoA synthetase BG1 SWALL:Q9HC26 (EMBL:AF179481) (724 aa) fasta scores: E(): 1.9e-28, 25.03% id in 639 aa

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002928.3 Reference assembly

    Range
    240121..242097 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_882588.1 AMP-binding enzyme [Bordetella parapertussis 12822]

    Status: PROVISIONAL

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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