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rpoB DNA-directed RNA polymerase subunit B [ Halobacterium salinarum NRC-1 ]

Gene ID: 1448998, updated on 17-Jun-2024

Summary

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Gene symbol
rpoB
Gene description
DNA-directed RNA polymerase subunit B
Locus tag
VNG_RS10445
Gene type
protein coding
Organism
Halobacterium salinarum NRC-1 (strain: NRC-1; ATCC 700922, culture-collection: ATCC:700922)
Lineage
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium
Old locus tag
VNG2665G; VNG_2665G
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Genomic context

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Sequence:
NC_002607.1 (1998659..2000485, complement)

NC_002607.1Genomic Context describing neighboring genes Neighboring gene NusA-like transcription termination signal-binding factor Neighboring gene DNA-directed RNA polymerase subunit A'' Neighboring gene DNA-directed RNA polymerase subunit A' Neighboring gene DNA-directed RNA polymerase subunit B'' Neighboring gene DNA-directed RNA polymerase subunit H

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_002607.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning and physical mapping of RNA polymerase genes from Methanobacterium thermoautotrophicum and comparison of homologies and gene orders with those of RNA polymerase genes from other methanogenic archaebacteria. Schallenberg J, et al. J Bacteriol, 1988 May. PMID 2834336, Free PMC Article
  2. Nucleotide sequence of the genes encoding the three largest subunits of the DNA-dependent RNA polymerase from the archaeum Thermococcus celer. Klenk HP, et al. Nucleic Acids Res, 1992 Sep 11. PMID 1408768, Free PMC Article
  3. The X-ray crystal structure of RNA polymerase from Archaea. Hirata A, et al. Nature, 2008 Feb 14. PMID 18235446, Free PMC Article
  4. Organization and nucleotide sequence of the genes encoding the large subunits A, B and C of the DNA-dependent RNA polymerase of the archaebacterium Sulfolobus acidocaldarius. Pühler G, et al. Nucleic Acids Res, 1989 Jun 26. PMID 2501756, Free PMC Article
  5. A manual curation strategy to improve genome annotation: application to a set of haloarchael genomes. Pfeiffer F, et al. Life (Basel), 2015 Jun 2. PMID 26042526, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
DNA-directed RNA polymerase subunit B
WP_010903997.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002607.1 Reference assembly

    Range
    1998659..2000485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_010903997.1 DNA-directed RNA polymerase subunit B [Halobacterium salinarum]

    See identical proteins and their annotated locations for WP_010903997.1

    UniProtKB/Swiss-Prot
    B0R8D5, P0CX03, P15351, Q9HM78
    UniProtKB/TrEMBL
    A0A2H4V6K7, A0A4D6NYY5, A0A510N9Q1
    Conserved Domains (1) summary
    PRK07225
    Location:4 → 608
    PRK07225; DNA-directed RNA polymerase subunit B'; Validated
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0CX03.1

Gene LinkOut

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