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LOC119006567 aryl hydrocarbon receptor nuclear translocator-like [ Acanthopagrus latus (yellowfin seabream) ]

Gene ID: 119006567, updated on 14-Dec-2023

Summary

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Gene symbol
LOC119006567
Gene description
aryl hydrocarbon receptor nuclear translocator-like
See related
EnsemblRapid:ENSALTG00010020018
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthopagrus latus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Acanthopagrus
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Genomic context

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Location:
chromosome: 17
Exon count:
21
Annotation release Status Assembly Chr Location
100 current fAcaLat1.1 (GCF_904848185.1) 17 NC_051055.1 (19125404..19138870)

Chromosome 17 - NC_051055.1Genomic Context describing neighboring genes Neighboring gene CUGBP Elav-like family member 3 Neighboring gene ceramide synthase 2b Neighboring gene cortexin domain containing 2-like Neighboring gene SET domain bifurcated histone lysine methyltransferase 1b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051055.1 Chromosome 17 Reference fAcaLat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of aryl hydrocarbon receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aryl hydrocarbon receptor nuclear translocator-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthopagrus latus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAcaLat1.1 Primary Assembly

Genomic

  1. NC_051055.1 Reference fAcaLat1.1 Primary Assembly

    Range
    19125404..19138870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037075416.1 → XP_036931311.1  aryl hydrocarbon receptor nuclear translocator-like isoform X1

    Conserved Domains (4) summary
    PHA03247
    Location:471 → 770
    PHA03247; large tegument protein UL36; Provisional
    cd18947
    Location:87 → 149
    bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
    pfam00989
    Location:164 → 270
    PAS; PAS fold
    pfam14598
    Location:363 → 462
    PAS_11; PAS domain

  2. XM_037075418.1 → XP_036931313.1  aryl hydrocarbon receptor nuclear translocator-like isoform X3

    Conserved Domains (3) summary
    cd18947
    Location:87 → 149
    bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
    pfam00989
    Location:164 → 270
    PAS; PAS fold
    pfam14598
    Location:363 → 462
    PAS_11; PAS domain

  3. XM_037075417.1 → XP_036931312.1  aryl hydrocarbon receptor nuclear translocator-like isoform X2

    Conserved Domains (4) summary
    PHA03247
    Location:471 → 769
    PHA03247; large tegument protein UL36; Provisional
    cd18947
    Location:87 → 149
    bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
    pfam00989
    Location:164 → 270
    PAS; PAS fold
    pfam14598
    Location:363 → 462
    PAS_11; PAS domain

  4. XM_037075421.1 → XP_036931316.1  aryl hydrocarbon receptor nuclear translocator-like isoform X6

    Conserved Domains (3) summary
    cd18947
    Location:87 → 149
    bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
    pfam00989
    Location:164 → 270
    PAS; PAS fold
    pfam14598
    Location:363 → 462
    PAS_11; PAS domain

  5. XM_037075419.1 → XP_036931314.1  aryl hydrocarbon receptor nuclear translocator-like isoform X4

    Related
    ENSALTP00010054324.1, ENSALTT00010058558.1
    Conserved Domains (4) summary
    PHA03247
    Location:455 → 754
    PHA03247; large tegument protein UL36; Provisional
    cd18947
    Location:71 → 133
    bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
    pfam00989
    Location:148 → 254
    PAS; PAS fold
    pfam14598
    Location:347 → 446
    PAS_11; PAS domain

  6. XM_037075420.1 → XP_036931315.1  aryl hydrocarbon receptor nuclear translocator-like isoform X5

    Conserved Domains (4) summary
    PHA03247
    Location:455 → 753
    PHA03247; large tegument protein UL36; Provisional
    cd18947
    Location:71 → 133
    bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
    pfam00989
    Location:148 → 254
    PAS; PAS fold
    pfam14598
    Location:347 → 446
    PAS_11; PAS domain

  7. XM_037075422.1 → XP_036931317.1  aryl hydrocarbon receptor nuclear translocator-like isoform X7

    Related
    ENSALTP00010054311.1, ENSALTT00010058545.1
    Conserved Domains (3) summary
    cd18947
    Location:71 → 133
    bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
    pfam00989
    Location:148 → 254
    PAS; PAS fold
    pfam14598
    Location:347 → 446
    PAS_11; PAS domain

  8. XM_037075423.1 → XP_036931318.1  aryl hydrocarbon receptor nuclear translocator-like isoform X8

    Related
    ENSALTP00010054303.1, ENSALTT00010058537.1
    Conserved Domains (3) summary
    cd18947
    Location:71 → 133
    bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
    pfam00989
    Location:148 → 254
    PAS; PAS fold
    pfam14598
    Location:347 → 446
    PAS_11; PAS domain

  9. XM_037075425.1 → XP_036931320.1  aryl hydrocarbon receptor nuclear translocator-like isoform X9

    Conserved Domains (3) summary
    cd18947
    Location:71 → 133
    bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
    pfam00989
    Location:148 → 254
    PAS; PAS fold
    pfam14598
    Location:347 → 446
    PAS_11; PAS domain
Nucleotide Protein
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