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PM3016_4943 DNA ligase [ Paenibacillus mucilaginosus 3016 ]

Gene ID: 11886946, updated on 6-Jul-2014
Gene symbol
PM3016_4943
Gene description
DNA ligase
Locus tag
PM3016_4943
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Paenibacillus mucilaginosus 3016 (strain: 3016)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus
Sequence:
NC_016935.1 (5942721..5944148, complement)

NC_016935.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene germination protein, GerC family Neighboring gene hypothetical protein Neighboring gene DNA polymerase LigD, polymerase domain-containing protein Neighboring gene cytochrome c heme-binding site protein Neighboring gene hypothetical protein

  • Base excision repair, organism-specific biosystem (from KEGG)
    Base excision repair, organism-specific biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Base excision repair, conserved biosystem (from KEGG)
    Base excision repair, conserved biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Mismatch repair, organism-specific biosystem (from KEGG)
    Mismatch repair, organism-specific biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Mismatch repair, conserved biosystem (from KEGG)
    Mismatch repair, conserved biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Non-homologous end-joining, organism-specific biosystem (from KEGG)
    Non-homologous end-joining, organism-specific biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
  • Non-homologous end-joining, conserved biosystem (from KEGG)
    Non-homologous end-joining, conserved biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
  • Nucleotide excision repair, organism-specific biosystem (from KEGG)
    Nucleotide excision repair, organism-specific biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
  • Nucleotide excision repair, conserved biosystem (from KEGG)
    Nucleotide excision repair, conserved biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_016935.1 

    Range
    5942721..5944148
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_005314824.1 DNA ligase [Paenibacillus mucilaginosus 3016]

    See proteins identical to YP_005314824.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    H6NLW0
    Conserved Domains (2) summary
    cd07906
    Location:4195
    Blast Score: 563
    Adenylation_DNA_ligase_LigD_LigC; Adenylation domain of Mycobacterium tuberculosis LigD and LigC-like ATP-dependent DNA ligases
    cl01287
    Location:333437
    Blast Score: 321
    AE_Prim_S_like; AE_Prim_S_like: primase domain similar to that found in the small subunit of archaeal and eukaryotic (A/E) DNA primases. The replication machineries of A/Es are distinct from that of bacteria. Primases are DNA-dependent RNA polymerases which synthesis ...

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