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LOC117163661 probable elongation factor 1-delta [ Bombus vancouverensis nearcticus ]

Gene ID: 117163661, updated on 14-Dec-2023

Summary

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Gene symbol
LOC117163661
Gene description
probable elongation factor 1-delta
See related
EnsemblRapid:ENSBVNG00000019344 EnsemblRapid:ENSBVNG00000019760
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombus vancouverensis nearcticus (sub-species: nearcticus)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Pyrobombus; Bombus vancouverensis
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Bvanc_JDL1245 (GCF_011952275.1) Unplaced Scaffold NW_022882406.1 (4615435..4621642, complement)

NW_022882406.1Genomic Context describing neighboring genes Neighboring gene solute carrier organic anion transporter family member 74D Neighboring gene uncharacterized LOC117163669 Neighboring gene splicing factor 3B subunit 6 Neighboring gene chromatin accessibility complex 16kD protein-like Neighboring gene biogenesis of lysosome-related organelles complex 1 subunit 5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022882406 Unplaced Scaffold Reference Bvanc_JDL1245

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-3' DNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via nonhomologous end joining IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protection from non-homologous end joining at telomere IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translational elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of eukaryotic translation elongation factor 1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable elongation factor 1-delta; protein artemis

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bombus vancouverensis nearcticus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bvanc_JDL1245

Genomic

  1. NW_022882406.1 Reference Bvanc_JDL1245

    Range
    4615435..4621642 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033346173.1 → XP_033202064.1  probable elongation factor 1-delta isoform X3

    Related
    ENSBVNP00000030567.1, ENSBVNT00000002947.1
    Conserved Domains (2) summary
    pfam00736
    Location:184 → 267
    EF1_GNE; EF-1 guanine nucleotide exchange domain
    pfam10587
    Location:145 → 165
    EF-1_beta_acid; Eukaryotic elongation factor 1 beta central acidic region

  2. XM_033346169.1 → XP_033202060.1  probable elongation factor 1-delta isoform X1

    Related
    ENSBVNP00000030566.1, ENSBVNT00000002946.1
    Conserved Domains (3) summary
    PTZ00372
    Location:61 → 176
    PTZ00372; endonuclease 4-like protein; Provisional
    pfam00736
    Location:342 → 425
    EF1_GNE; EF-1 guanine nucleotide exchange domain
    pfam10587
    Location:303 → 323
    EF-1_beta_acid; Eukaryotic elongation factor 1 beta central acidic region

  3. XM_033346170.1 → XP_033202061.1  probable elongation factor 1-delta isoform X1

    Related
    ENSBVNP00000030564.1, ENSBVNT00000002944.1
    Conserved Domains (3) summary
    PTZ00372
    Location:61 → 176
    PTZ00372; endonuclease 4-like protein; Provisional
    pfam00736
    Location:342 → 425
    EF1_GNE; EF-1 guanine nucleotide exchange domain
    pfam10587
    Location:303 → 323
    EF-1_beta_acid; Eukaryotic elongation factor 1 beta central acidic region

  4. XM_033346174.1 → XP_033202065.1  probable elongation factor 1-delta isoform X3

    Conserved Domains (2) summary
    pfam00736
    Location:184 → 267
    EF1_GNE; EF-1 guanine nucleotide exchange domain
    pfam10587
    Location:145 → 165
    EF-1_beta_acid; Eukaryotic elongation factor 1 beta central acidic region

  5. XM_033346171.1 → XP_033202062.1  protein artemis isoform X2

    Related
    ENSBVNP00000031451.1, ENSBVNT00000002006.1
    Conserved Domains (2) summary
    pfam07522
    Location:242 → 337
    DRMBL; DNA repair metallo-beta-lactamase
    cl23716
    Location:1 → 168
    metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain

  6. XM_033346172.1 → XP_033202063.1  protein artemis isoform X2

    Conserved Domains (2) summary
    pfam07522
    Location:242 → 337
    DRMBL; DNA repair metallo-beta-lactamase
    cl23716
    Location:1 → 168
    metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain
Nucleotide Protein
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