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TPHA0M02090 hypothetical protein [ Tetrapisispora phaffii CBS 4417 ]

Gene ID: 11531908, updated on 22-Oct-2023

Summary

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Gene symbol
TPHA0M02090
Gene description
hypothetical protein
Locus tag
TPHA_0M02090
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Tetrapisispora phaffii CBS 4417 (strain: type strain:CBS 4417)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Tetrapisispora
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Genomic context

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See TPHA0M02090 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
1
Sequence:
Chromosome: 13; NC_016532.1 (430238..436132)

Chromosome 13 - NC_016532.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_016532.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents. Gordon JL, et al. Proc Natl Acad Sci U S A, 2011 Dec 13. PMID 22123960, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_003688217.1
  • similar to Saccharomyces cerevisiae CDC39 (YCR093W); ancestral locus Anc_6.373

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_016532.1 Reference assembly

    Range
    430238..436132
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003688169.1 → XP_003688217.1  hypothetical protein TPHA_0M02090 [Tetrapisispora phaffii CBS 4417]

    See identical proteins and their annotated locations for XP_003688217.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    G8C0R8
    Conserved Domains (4) summary
    COG5103
    Location:25 → 1963
    CDC39; Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
    pfam04054
    Location:1592 → 1953
    Not1; CCR4-Not complex component, Not1
    pfam16415
    Location:758 → 975
    CNOT1_CAF1_bind; CCR4-NOT transcription complex subunit 1 CAF1-binding domain
    pfam16417
    Location:577 → 677
    CNOT1_TTP_bind; CCR4-NOT transcription complex subunit 1 TTP binding domain
Nucleotide Protein
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