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ZNF71-SMIM17 ZNF71-SMIM17 readthrough (NMD candidate) [ Homo sapiens (human) ]

Gene ID: 114818278, updated on 10-Oct-2023

Summary

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Gene symbol
ZNF71-SMIM17
Gene description
ZNF71-SMIM17 readthrough (NMD candidate)
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This gene represents a read-through transcript composed of ZNF71 and SMIM17 sequence. The transcripts are thought to be non-coding because they would be subject to nonsense-mediated mRNA decay (NMD). [provided by RefSeq, May 2019]
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Genomic context

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Location:
19q13.43
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (56595302..56657247)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (59689707..59751380)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (57106670..57168615)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904777 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11070 Neighboring gene sialic acid binding Ig like lectin 31, pseudogene Neighboring gene zinc finger protein 71 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:57128366-57128584 Neighboring gene Sharpr-MPRA regulatory region 15209 Neighboring gene small integral membrane protein 17 Neighboring gene uncharacterized LOC105372473 Neighboring gene zinc finger protein 835 Neighboring gene uncharacterized LOC105372472

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_163262.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007228

  2. NR_163263.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007228

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    56595302..56657247
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    59689707..59751380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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