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Ecym_1212 hypothetical protein [ Eremothecium cymbalariae DBVPG#7215 ]

Gene ID: 11471366, updated on 22-Oct-2023

Summary

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Gene symbol
Ecym_1212
Gene description
hypothetical protein
Locus tag
Ecym_1212
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Eremothecium cymbalariae DBVPG#7215 (strain: DBVPG#7215)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_016449.1 (429036..433991, complement)

Chromosome 1 - NC_016449.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_016449.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome evolution in the eremothecium clade of the Saccharomyces complex revealed by comparative genomics. Wendland J, et al. G3 (Bethesda), 2011 Dec. PMID 22384365, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin light chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi to endosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in receptor-mediated endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cortical patch IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of clathrin coat of coated pit IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of clathrin coat of trans-Golgi network vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of clathrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_003644276.1
  • similar to Ashbya gossypii AER359W

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_016449.1 Reference assembly

    Range
    429036..433991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003644228.1 → XP_003644276.1  hypothetical protein Ecym_1212 [Eremothecium cymbalariae DBVPG#7215]

    See identical proteins and their annotated locations for XP_003644276.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    G8JMZ5
    Conserved Domains (4) summary
    smart00299
    Location:1280 → 1422
    CLH; Clathrin heavy chain repeat homology
    pfam00637
    Location:1138 → 1273
    Clathrin; Region in Clathrin and VPS
    pfam09268
    Location:339 → 359
    Clathrin-link; Clathrin, heavy-chain linker
    pfam13838
    Location:370 → 425
    Clathrin_H_link; Clathrin-H-link
Nucleotide Protein
Heading Accession and Version

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