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LOC11446997 uncharacterized LOC11446997 [ Medicago truncatula (barrel medic) ]

Gene ID: 11446997, updated on 25-Jan-2024

Summary

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Gene symbol
LOC11446997
Gene description
uncharacterized LOC11446997
Locus tag
MtrunA17_Chr4g0047931
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (43804122..43809189)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (35864350..35869389)

Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC11445756 Neighboring gene uncharacterized LOC25493221 Neighboring gene protein POLLEN DEFECTIVE IN GUIDANCE 1-like Neighboring gene uncharacterized LOC25493222 Neighboring gene transfer RNA isoleucine (anticodon UAU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of NuA4 histone acetyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC11446997
Names
bromodomain protein
putative transcription factor MYB-related family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    43804122..43809189
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024782579.2 → XP_024638347.1  uncharacterized protein LOC11446997 isoform X1

    Conserved Domains (2) summary
    smart00297
    Location:361 → 456
    BROMO; bromo domain
    cd00167
    Location:8 → 58
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  2. XM_003608135.4 → XP_003608183.2  uncharacterized protein LOC11446997 isoform X2

    UniProtKB/TrEMBL
    A0A0C3X2A8, G7JQR8
    Conserved Domains (2) summary
    smart00297
    Location:361 → 455
    BROMO; bromo domain
    cd00167
    Location:8 → 58
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
Nucleotide Protein
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