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SIX1 SIX homeobox 1 [ Neopelma chrysocephalum (saffron-crested tyrant-manakin) ]

Gene ID: 113976805, updated on 3-Aug-2024

Summary

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Gene symbol
SIX1
Gene description
SIX homeobox 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Neopelma chrysocephalum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Pipridae; Neopelma
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current ASM398488v2 (GCF_003984885.1) Unplaced Scaffold NW_020897845.1 (291151..293580)

NW_020897845.1Genomic Context describing neighboring genes Neighboring gene MNAT1 component of CDK activating kinase Neighboring gene SIX homeobox 4 Neighboring gene chromosome unknown C14orf39 homolog Neighboring gene SIX homeobox 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020897845 Unplaced Scaffold Reference ASM398488v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein SIX1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neopelma chrysocephalum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM398488v2

Genomic

  1. NW_020897845.1 Reference ASM398488v2

    Range
    291151..293580
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027702372.1 → XP_027558173.1  homeobox protein SIX1

    Conserved Domains (2) summary
    cd00086
    Location:129 → 180
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam16878
    Location:9 → 118
    SIX1_SD; Transcriptional regulator, SIX1, N-terminal SD domain
Nucleotide Protein
Heading Accession and Version

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