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SP6 Sp6 transcription factor [ Zalophus californianus (California sea lion) ]

Gene ID: 113939851, updated on 15-Mar-2024

Summary

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Gene symbol
SP6
Gene description
Sp6 transcription factor
See related
EnsemblRapid:ENSZCAG00025021631
Gene type
protein coding
RefSeq status
MODEL
Organism
Zalophus californianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus
Orthologs
human mouse all
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Genomic context

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See SP6 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
1
Annotation release Status Assembly Chr Location
101 current mZalCal1.pri.v2 (GCF_009762305.2) 16 NC_045610.1 (37727893..37731441)
100 previous assembly zalCal2.2 (GCF_900631625.1) Unplaced Scaffold NW_020875730.1 (23372344..23375892, complement)

Chromosome 16 - NC_045610.1Genomic Context describing neighboring genes Neighboring gene proline rich 15 like Neighboring gene pyridoxamine 5'-phosphate oxidase Neighboring gene uncharacterized LOC113939764 Neighboring gene Sp2 transcription factor Neighboring gene secernin 2 Neighboring gene leucine rich repeat containing 46

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor Sp6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zalophus californianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mZalCal1.pri.v2 Primary Assembly

Genomic

  1. NC_045610.1 Reference mZalCal1.pri.v2 Primary Assembly

    Range
    37727893..37731441
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027626500.2 → XP_027482301.1  transcription factor Sp6

    UniProtKB/TrEMBL
    A0A6J2FQV3
    Related
    ENSZCAP00025034119.1, ENSZCAT00025038544.1
    Conserved Domains (3) summary
    COG5048
    Location:261 → 336
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:259 → 278
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd22544
    Location:1 → 255
    SP6_N; N-terminal domain of transcription factor Specificity Protein (SP) 6
Nucleotide Protein
Heading Accession and Version

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