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DCHS1 dachsous cadherin-related 1 [ Zalophus californianus (California sea lion) ]

Gene ID: 113913776, updated on 15-Mar-2024

Summary

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Gene symbol
DCHS1
Gene description
dachsous cadherin-related 1
See related
EnsemblRapid:ENSZCAG00025012565
Gene type
protein coding
RefSeq status
MODEL
Organism
Zalophus californianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Otariidae; Zalophus
Orthologs
human mouse all
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Genomic context

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See DCHS1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
22
Annotation release Status Assembly Chr Location
101 current mZalCal1.pri.v2 (GCF_009762305.2) 11 NC_045605.1 (62404392..62439788, complement)
100 previous assembly zalCal2.2 (GCF_900631625.1) Unplaced Scaffold NW_020879070.1 (50410020..50445414)

Chromosome 11 - NC_045605.1Genomic Context describing neighboring genes Neighboring gene ribosomal RNA processing 8 Neighboring gene integrin linked kinase Neighboring gene TATA-box binding protein associated factor 10 Neighboring gene tripeptidyl peptidase 1 Neighboring gene mitochondrial ribosomal protein L17 Neighboring gene interferon-induced very large GTPase 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zalophus californianus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mZalCal1.pri.v2 Primary Assembly

Genomic

  1. NC_045605.1 Reference mZalCal1.pri.v2 Primary Assembly

    Range
    62404392..62439788 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027577997.2 → XP_027433798.2  protocadherin-16 isoform X2

    UniProtKB/TrEMBL
    A0A6J2BVK2
    Related
    ENSZCAP00025019734.1, ENSZCAT00025022426.1
    Conserved Domains (1) summary
    cd11304
    Location:1112 → 1205
    Cadherin_repeat; Cadherin tandem repeat domain

  2. XM_027577996.2 → XP_027433797.2  protocadherin-16 isoform X1

    UniProtKB/TrEMBL
    A0A6J2BUB7
    Conserved Domains (1) summary
    cd11304
    Location:1155 → 1248
    Cadherin_repeat; Cadherin tandem repeat domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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