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COL6A6 collagen type VI alpha 6 chain [ Bos indicus x Bos taurus (hybrid cattle) ]

Gene ID: 113896916, updated on 15-Mar-2024

Summary

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Gene symbol
COL6A6
Gene description
collagen type VI alpha 6 chain
See related
Ensembl:ENSBIXG00005002476
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus x Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
38
Annotation release Status Assembly Chr Location
100 current UOA_Brahman_1 (GCF_003369695.1) 1 NC_040076.1 (150919959..151097050, complement)

Chromosome 1 - NC_040076.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113896912 Neighboring gene phosphoinositide-3-kinase regulatory subunit 4 Neighboring gene collagen type VI alpha 5 chain Neighboring gene collagen alpha-4(VI) chain-like Neighboring gene ubiquitin carboxyl-terminal hydrolase 46-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040076.1 Chromosome 1 Reference UOA_Brahman_1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent conferring tensile strength IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-6(VI) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus x Bos taurus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UOA_Brahman_1

Genomic

  1. NC_040076.1 Reference UOA_Brahman_1

    Range
    150919959..151097050 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027549059.1 → XP_027404860.1  collagen alpha-6(VI) chain isoform X2

    UniProtKB/TrEMBL
    A0A4W2F378

  2. XM_027549043.1 → XP_027404844.1  collagen alpha-6(VI) chain isoform X1

    UniProtKB/TrEMBL
    A0A4W2F378, A0A4W2G0T7

  3. XM_027549052.1 → XP_027404853.1  collagen alpha-6(VI) chain isoform X1

    UniProtKB/TrEMBL
    A0A4W2F378, A0A4W2G0T7
    Related
    ENSBIXP00005011335.1, ENSBIXT00005045625.1
Nucleotide Protein
Heading Accession and Version

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