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CHD1 chromodomain helicase DNA binding protein 1 [ Bos indicus x Bos taurus (hybrid cattle) ]

Gene ID: 113894972, updated on 15-Mar-2024

Summary

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Gene symbol
CHD1
Gene description
chromodomain helicase DNA binding protein 1
See related
Ensembl:ENSBIXG00005030719
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus x Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
38
Annotation release Status Assembly Chr Location
100 current UOA_Brahman_1 (GCF_003369695.1) 7 NC_040082.1 (12501696..12576373)

Chromosome 7 - NC_040082.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L7-like Neighboring gene uncharacterized LOC113894971 Neighboring gene small nucleolar RNA U3 Neighboring gene histone-lysine N-methyltransferase SETMAR-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040082.1 Chromosome 7 Reference UOA_Brahman_1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus x Bos taurus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UOA_Brahman_1

Genomic

  1. NC_040082.1 Reference UOA_Brahman_1

    Range
    12501696..12576373
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027545535.1 → XP_027401336.1  chromodomain-helicase-DNA-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A4W2F4E6

  2. XM_027545532.1 → XP_027401333.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4W2F4E6, A0A4W2H959
    Related
    ENSBIXP00005027381.1, ENSBIXT00005055137.1

  3. XM_027545536.1 → XP_027401337.1  chromodomain-helicase-DNA-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A4W2CYW3, A0A4W2H947
    Related
    ENSBIXP00005027365.1, ENSBIXT00005055175.1

  4. XM_027545533.1 → XP_027401334.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4W2F4E6, A0A4W2H959
Nucleotide Protein
Heading Accession and Version

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