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OTX1 orthodenticle homeobox 1 [ Anas platyrhynchos (mallard) ]

Gene ID: 113843095, updated on 15-Mar-2024

Summary

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Gene symbol
OTX1
Gene description
orthodenticle homeobox 1
See related
EnsemblRapid:ENSAPLG00030023586
Gene type
protein coding
RefSeq status
MODEL
Organism
Anas platyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anatinae; Anas
Orthologs
human mouse all
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Genomic context

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See OTX1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
104 current ZJU1.0 (GCF_015476345.1) 3 NC_051774.1 (11761753..11766044, complement)
103 previous assembly IASCAAS_PekingDuck_PBH1.5 (GCF_003850225.1) 3 NC_040048.1 (14949809..14953503, complement)

Chromosome 3 - NC_051774.1Genomic Context describing neighboring genes Neighboring gene malate dehydrogenase 1 Neighboring gene WD repeat containing planar cell polarity effector Neighboring gene uncharacterized LOC113843096 Neighboring gene uncharacterized LOC106016988 Neighboring gene EH domain binding protein 1 Neighboring gene uncharacterized LOC106016989 Neighboring gene transmembrane protein 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein OTX1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Anas platyrhynchos Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ZJU1.0 Primary Assembly

Genomic

  1. NC_051774.1 Reference ZJU1.0 Primary Assembly

    Range
    11761753..11766044 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038176746.1 → XP_038032674.1  homeobox protein OTX1

    UniProtKB/TrEMBL
    A0A493SXT3
    Conserved Domains (2) summary
    pfam00046
    Location:42 → 95
    Homeobox; Homeobox domain
    pfam03529
    Location:171 → 266
    TF_Otx; Otx1 transcription factor

  2. XM_027453431.2 → XP_027309232.1  homeobox protein OTX1

    UniProtKB/TrEMBL
    A0A493SXT3
    Related
    ENSAPLP00030039499.1, ENSAPLT00030061632.1
    Conserved Domains (2) summary
    pfam00046
    Location:42 → 95
    Homeobox; Homeobox domain
    pfam03529
    Location:171 → 266
    TF_Otx; Otx1 transcription factor
Nucleotide Protein
Heading Accession and Version

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